PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023684m
Common NameCARUB_v10023675mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 312aa    MW: 34400.6 Da    PI: 6.342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023684mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix941.4e-2940133185
         trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      rWt+qe+l+Li+++r  e+r+rrg+         +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++
  Carubv10023684m  40 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 133
                      8**********************97778888888******************************************************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-1340130No hitNo description
Gene3DG3DSA:1.10.10.605.3E-540105IPR009057Homeodomain-like
PROSITE profilePS500906.440106IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MALEQLGLGV SAVDGGGGEN SSAPSNDGGD DGVKTARLPR WTRQEILVLI QGKRVAENRV  60
RRGRAAGMAL GSGQMEPKWA SVSSYCRRHG VNRGPVQCRK RWSNLAGDYK KIKEWESQVK  120
EETESYWVMR NDVRREKKLP GFFDKEVYDI VDGAVIPPAV PTLALGLAPA SEEGLLPDLD  180
RPNELNSTPV PISVSDKEKQ EACKADQGRL KEKHPEGANV EGGSTSQEER KRKRTSTNEK  240
EEEEDGEGET KKMQNQLIEI LERNGQLLAA QLEVQNLNLK LDREQRKDHG DSLVAVLNKL  300
ADAVTKIADK L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3223830.0HQ322383.1 Arabidopsis thaliana trihelix (At2g33550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294637.10.0hypothetical protein CARUB_v10023675mg
SwissprotQ8VZ200.0ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLR0HQI30.0R0HQI3_9BRAS; Uncharacterized protein
STRINGscaffold_401930.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-178Trihelix family protein